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Past REU Publications + Posters
Summer Research with REU
This page lists all of the research papers and posters involving students participating in the Research Experiences for Undergraduates (REU) program each summer. When each student applies, they choose which type of research interests them the most, then they are placed to work with one of our participating faculty mentors. Click the button below to learn more about each faculty member and the different type of projects they are working on.
All participating REU students are highlighted in bold and marked with an asterisk (*) in the sections below.
Publications/Papers
The following publications and papers all involve students that have participated in the REU program. You can view more about each paper by clicking the associated DOI link.
2023
- Gomes, R., Pham, T.*, He, N., Kamrowski, C., & Wildenberg, J. (2023). Analysis of Swin-UNet vision transformer for Inferior Vena Cava filter segmentation from CT scans. In Artificial Intelligence in the Life Sciences (Vol. 4, p. 100084). Elsevier BV. https://doi.org/10.1016/j.ailsci.2023.100084
- Rozario, P. F., Ruehmann, E., Pham, T.*, Sun, T., Jensen, J.*, Jia, H.*, Yu, Z., & Gomes, R. (2023). Deep Learning Patch-Based Approach for Hyperspectral Image Classification. 2023 IEEE International Conference on Electro Information Technology (eIT). IEEE. https://doi.org/10.1109/eit57321.2023.10187387 (NSF-PAR link)
2024
- Liebau, J., Laatsch, B. F., Rusnak, J.*, Gunderson, K., Finke, B., Bargender, K., Narkiewicz-Jodko, A., Weeks, K., Williams, M. T., Shulgina, I., Musier-Forsyth, K., Bhattacharyya, S., & Hati, S. (2024). Polyethylene Glycol Impacts Conformation and Dynamics of Escherichia coli Prolyl-tRNA Synthetase Via Crowding and Confinement Effects. In Biochemistry (Vol. 63, Issue 13, pp. 1621–1635). American Chemical Society (ACS). https://doi.org/10.1021/acs.biochem.3c00719
- Rozario, P. F., Gadgil, R.*, Lee, J., Gomes, R., Keller, P., Liu, Y., Sipos, G., McDonnell, G., Impola, W.*, & Rudolph, J.* (2024). Optimizing Mobile Vision Transformers for Land Cover Classification. In Applied Sciences (Vol. 14, Issue 13, p. 5920). MDPI AG. https://doi.org/10.3390/app14135920
- Wang, A.*, Gomes, R., & Rozario, P. F. (2024). OSDA-ST: Advancing Open Set Domain Adaptation Through Selective Thresholding in Remote Sensing. In 2024 IEEE International Conference on Big Data (BigData) (pp. 7563–7570). 2024 IEEE International Conference on Big Data (BigData). IEEE. https://doi.org/10.1109/bigdata62323.2024.10825228
2025
- Monsia, R.*, & Bhattacharyya, S. (2025). Efficient and Explainable Virtual Screening of Molecules through Fingerprint-Generating Networks Integrated with Artificial Neural Networks. In ACS Omega. American Chemical Society (ACS). https://doi.org/10.1021/acsomega.4c10289
Posters
Each summer, the students participating in the REU program create research posters to present at the WiSys SPARK Symposium, among the many other activities they are involved with during their ten weeks here at UW-Eau Claire. Broken down by year, you can view and download each of the posters below and learn more about each of the different research projects that the students have been working on.
NSF-REU 2022
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Computational Docking of Small Molecules as Potential Inhibitors of Xanthine Oxidase
Alyse Tainter*, Sydney Schroeder, Dr. Sudeep Bhattacharyya, Dr. Thao Yang
Chemistry and Biochemistry

Investigating the Macromolecular Crowding and Confinement Effects Using High-Performance Computational Simulations: A Case Study with Escherichia coli Prolyl-tRNA Synthetase
Joshua Rusnak*, Dr. Sanchita Hati, and Dr. Sudeep Bhattacharyya
Chemistry and Biochemistry
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Aspect Oriented Sentiment Analysis in Software Engineering
Fatima Orpineda*, Dr. Md Rakibul Islam
Computer Science

Using 3D Deep Learning for Detecting of Inferior Vena Cava Filters
Tyler Pham*, Jacob Jensen*, Connor Kamrowski, Dr. Rahul Gomes, Dr. Joe Wildenberg
Computer Science
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Spectral-Spatial Classification of Hyperspectral Imagery Using Deep Learning
Dr. Papia F. Rozario, Dr. Rahul Gomes, Laney Ruehmann, Tianqi Sun, Hengrui Jia*, Jacob Jensen*, Tyler Pham*
Geography and Anthropology, Computer Science
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Comparing the Accuracy of FTIR Imaging and QCL Technology for the Differentiation between Chromophobe Renal Cell Carcinoma and Oncocytoma
Blake Mathisen, Mikayla Hady, Zachary Caterer, Olesya Shelomova*, Dr. Suman Setty, Dr. Michael Walsh
Materials Science & Biomedical Engineering
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Computational Screening of Future Cathode Materials for Lithium-Ion Batteries
Felicia Kedrowski*, Dr. Ying Ma
Materials Science and Biomedical Engineering
NSF-REU 2023
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Computational Screening of Future Cathode Materials for Sodium-Ion Batteries
Matthew Glaus*, Dr. Ying Ma
Materials Science and Biomedical Engineering
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Modeling of White Dwarf Recurrent Helium Novae
Teagan Laws*, Dr. William Wolf
Physics and Astronomy
NSF-REU 2024
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A Graph Convolutional Neural Network for Inhibitor Screening and Pharmacophore Modeling of Prolyl-tRNA Synthetase
Matias Vantilburg*, Dr. Sanchita Hati, Dr. Sudeep Bhattacharyay
Chemistry and Biochemistry
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Investigating the Impact of Protein Dynamics and Molecular Crowding on the Inhibitors Binding to Prolyl-tRNA Synthetases Using High-Throughput Docking
Eduardo Miranda*, Dr. Sanchita Hati, Dr. Sudeep Bhattacharyay
Chemistry and Biochemistry
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Studying How Proteins Behave Within Cells by Replicating Cellular Conditions Through Advanced Supercomputer Simulation
Anne Moise*, Dr. Sudeep Bhattacharyay, Dr. Sanchita Hati
Chemistry and Biochemistry
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Supercomputer-based Quantum Chemical Analysis of Frontier Orbitals in the Determination of Molecular Hardness of Neurotransmitters and Antidepressants
Stewart Gundry*, Dr. Sanchita Hati, Dr. Sudeep Bhattacharyay
Chemistry and Biochemistry
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Open-Set Domain Adaptation for Semantic Segmentation (OSDA-SS) with CRF and Unknown Class Reweighting
Andy Wang*, Dr. Rahul Gomes, Dr. Papia F. Rozario, Daniel Chvat*, Landon Dierkes*, Grace Abraham*, Kristen North*
Computer Science, Geography and Anthropology
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Exploring Spatial Cross-Validation (CV) Techniques for Enhanced Crop Yield Prediction Models
Daniel Chvat*, Landon Dierkes*, Grace Abraham*, Kristen North*, Andy Wang*, Gabriel Sipos, Grace McDonnell, Dr. Papia Rozario, Dr. Rahul Gomes
Geography and Anthropology, Computer Science
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Computer Simulation of Silicon-based Materials as Possible Anode for Lithium-ion Batteries
Cristina Guzmán*, Dr. Ying Ma
Materials Science and Biomedical Engineering